Supplementary Materials for
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- Εἰλείθυια Καλογιάννης
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1 Supplementary Materials for PD-1 Marks Dysfunctional Regulatory T cells in Malignant Gliomas Daniel E. Lowther 1,, Brittany A. Goods 2,, Liliana E. Lucca 1,, Benjamin A. Lerner 1, Khadir Raddassi 1, David van Dijk 3, Amanda L. Hernandez 1, Xiangguo Duan 1,*, Murat Gunel 3.4, Vlad Coric 5, Smita Krishnaswamy 3, J. Christopher Love 2,6,, and David A. Hafler 1,6, 1 Departments of Neurology and Immunobiology, Yale School of Medicine, New Haven, Connecticut 06520, 2 Departments of Biological Engineering and Chemical Engineering, Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA, 3 Department of Genetics, Yale School of Medicine, New Haven, Connecticut 06520, 4 Department of Neurosurgery, Yale School of Medicine, New Haven, Connecticut 06520, 5 Bristol-Myers Squibb, Wallingford, Connecticut, 06492, 6 The Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA This PDF file includes: Materials and Methods Supplementary Figures 1 to 17 Supplementary Tables 1 to 11 References (64-68)
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3 Supplementary Figure 1. Gating strategy for the isolation of Programmed cell death protein 1 (PD-1) high and PD-1 - FoxP3 + Tregs. a, Representative plot showing gates for Tregs (CD25 hi CD127 lo ) and Teffs (CD25 lo CD127 + ) among total CD4 + cells, and gates for PD-1 high Tregs and Teffs based on isotype control b, quantification of the frequency of PD-1 high cells among Tregs and Teffs. N = 9, mean +/- S.D., paired Student s t test. c, Representative FoxP3 staining of total Teff (black line), total Tregs (purple line), PD-1- Tregs (blue line) and PD-1 high Tregs (red line). d, Frequency of Foxp3% cells among total, PD-1 high and PD-1 - Treg gates for 8 individuals, mean + S.D, paired Student s t test. 36
4 Supplementary Figure 2. Blocking IFNγ doesn t restore suppression activity in Programmed cell death protein 1 (PD-1) high Tregs. a, Proliferation of T effectors co-cultured with PD-1 - or PD-1 high Tregs (Teff/Treg ratio 1:2) in the presence of a blocking anti-ifnγ antibody (grey line) or an isotype control (black line). Treg and Teff were stimulated for 4 days with acd3/acd28/acd2. b, Percentage of suppression of 4 individuals calculated from the percentage of divided cells, or c, division index. For b, c Mean + S.D, Student s t test
5 Supplementary Figure 3. Programmed cell death protein 1 (PD-1) high Tregs display reduced proliferation in vitro. Proliferation of sorted Tregs stimulated for 4 days with acd3/acd28/acd2 in the presence of IL-2, assessed as dilution of CFSE. CFSE low Tregs were gated among live FoxP3 + cells. Mean + S.D. of 4 individuals. 38
6 Supplementary Figure 4. Blocking the Programmed cell death protein 1 (PD-1)- Programmed cell death ligand 1 (PD-L1) axis does not restore suppression activity in PD- 1 high Tregs. a, Proliferation of T effectors co-cultured with PD-1 high Tregs (Teff/Treg ratio 1:2) in the presence of blocking antibodies for PD-1, PD-L1, or both in combination. Treg and Teff were stimulated for 4 days with acd3/acd28/acd2. b, Division index of T effectors alone (black dots) or co-cultured with PD-1 high Tregs (white dots) of 4 individuals. Mean + S.D., One-way Anova (b) and Two-way ANOVA (c) with Sidak multiple comparison correction. 39
7 Supplementary Figure 5. Quality control metrics of RNA-sequencing libraries. a, Indicated quality metrics for each library are shown, mean and standard deviation are shown. b, Ratio metrics for each library are shown, where healthy control libraries are highlighted in red. Mean and standard deviation are shown. c, Boxplots of select transcripts are shown. Bounds of the boxes: 25 th and 75 th percentile; line within the box: median; top and bottom whiskers: maximum and minimum values
8 Supplementary Figure 6. Fully annotated heatmap of functional cluster shown in Figure 2B
9 Supplementary Figure 7. Characterization of Programmed cell death protein 1 (PD-1) high and PD-1 CD4 Treg. Expression of selected cell markers within PD-1 high and PD-1 Tregs (CD4 + CD25 + CD127 Foxp3 + ). Bounds of the boxes: 25 th and 75 th percentile; line within the box: median; top and bottom whiskers: maximum and minimum values
10 Supplementary Figure 8. Example gene sets enrichment analysis results for healthy control Programmed cell death protein 1 (PD-1) high RNAseq libraries with select genes in leading edge highlighted. a, Apoptosis pathway, b, Mitotic G1 G1 S Phase, and c, Cell cycle checkpoints. Leading edge is highlighted with a yellow bar, PD-1 high with a grey bar, and PD-1 with a black bar
11 1 2 3 Supplementary Figure 9. Representative staining for Programmed cell death protein 1 (PD- 1) and T-cell immunoglobulin and mucin domain-containing 3 (TIM-3) in the blood and 44
12 tumor infiltrate of patients with different WHO grade gliomas (grade II = G15, grade III = G11 grade IV = G3). a, Plots are gated on live CD4 + CD25 hi CD127 FoxP3 +. b, Representative FoxP3 staining from the same samples. Histograms are gated on live CD4 + CD25 hi CD127 45
13 Supplementary Figure 10. Treg (CD4 + CD25 + CD127 ) populations from peripheral blood of glioblastoma multiforme (GBM) patients co-cultured with CD4 effectors (CD4 + CD25 CD127 + ). Treg and Teff were cultured at a 1:2 ratio (n=4; G37-40). Statistical analyses were performed using paired student s t-test
14 Supplementary Figure 11. Scatter plot matrix of log10(counts + 1) and Pearson correlation 22 coefficient for each indicated tumor-derived sample. a, BT229 PD-1, b, BT213 PD-1, c, 23 BT215 PD-1, d, BT219 PD-1, e, BT220 PD-1, f, BT223 PD-1, g, BT228 PD-1, h, BT PD-1high, i, BT213 PD-1high, j, BT215 PD-1high, k, BT219 PD-1high, l, BT220 PD-1high, m, BT PD-1high, n, BT228 PD-1high
15 Supplementary Figure 12. Differential expression of Programmed cell death protein 1 (PD- 1) high or PD-1 - Tregs within tumor or blood. a, Venn diagram comparison of differential expression of PD-1high or PD-1 Tregs from tumor as compared to blood. Gene sets were filtered based on p-value for top differentially expressed genes and lists were compared. b, Heatmap of 41 common genes identified. Data was hierarchically clustered and k means clustered using GeneE. 48
16 Supplementary Figure 13. Differential expression of Programmed cell death protein 1 (PD- 1) high or PD-1 - Tregs within tumor or blood, unique gene sets are shown as indicated from Supplementary Figure 10a. Data was hierarchically clustered and k means clustered using GeneE. 49
17 Supplementary Figure 14. Representative gating strategy for Tregs in cytometry by time of 6 flight (CyTOF) data. Representative of four patients
18 Supplementary Figure 15. Multi-dimensional single-cell Treg data measured by cytometry by time of flight (CyTOF). Tregs were sorted in silico as CD3 + CD45 + CD8 - CD4 + CD127 + Foxp3 +. Single-cells organized in a nested structure by patient (shown on left 51
19 1 2 3 colorbar) and louvain clusters (shown on right colorbar). Data for week 1 blood, week 7 blood, and tumors are shown. Transformed data represents arcsin transformed raw values. 52
20 1 2 Supplementary 3 representation of cytometry by time of flight (CyTOF) data. a. Multidimentional tsne plot 4 colored according to week 1 blood, week 7 blood, or tumor. b. Same tsne plots as in a, but 5 colored according to protein. Figure 16. T-distributed stochastic neighbor embedding (tsne)
21 Supplementary Figure 17. Robustness analysis of conditional-density rescaled estimate of mutual information (DREMI). DREMI was computed on measured proteins against Programmed cell death protein 1 (PD-1) in blood from week 1, blood from week 7 and in the tumor at recurrence, in order to score and compare relationship strength. Here we compute the robustness of the DREMI scores by computing the standard deviation in DREMI scores in 100 trials where 10% of cells were randomly discarded. 54
22 1 Supplementary Table 1, RNA-sequencing quality control information for all samples. Full BT and Subset Sample ID Number of Cells Number of reads Mapped (%) 5'/3' 213BloodTregPD1pos E % BloodTregPD1neg E % TumorTregPD1pos E % TumorTregPD1neg E % BloodTregPD1pos E % TumorTregPD1pos E % TumorTregPD1neg E % BloodTregPD1neg E % TumorTregPD1pos E % TumorTregPD1neg E % BloodTregPD1pos E % BloodTregPD1neg E % TumorTregPD1pos E % TumorTregPD1neg E % BloodTregPD1pos E % BloodTregPD1neg E % TumorTregPD1pos E % TumorTregPD1neg E % BloodTregPD1pos E % BloodTregPD1neg E % BloodTregPD1pos E % BloodTregPD1neg E % TumorTregPD1pos E % TumorTregPD1neg E % TumorTregPD1pos E % TumorTregPD1neg E % BloodTregPD1pos E % BloodTregPD1neg E % BloodTregPD1neg E % BloodTregtotal E % BloodTregPD1pos E % BloodTregtotal E % BloodTregPD1pos E % BloodTregPD1neg E %
23 BloodTregPD1pos E % BloodTregtotal E % BloodTregPD1neg E %
24 1 2 1) high and PD-1 - Tregs from healthy donors. Supplementary Table 2, Differentially expressed genes in Programmed cell death protein 1 (PD- BloodPD1 BloodPD1ne negtreg_ BloodPD1negT BloodPD1neg gtreg_hcvs HCvsBloo reg_hcvsblood Treg_HCvsBl Transcript Gene Symbol BloodPD1pos dpd1post PD1posTreg_H oodpd1postr Treg_HC_- reg_hc_l C_pvalue eg_hc_fdr log10pval og2fc uc001qqs.3,uc001qqt.4,uc001qqu.3 LAG E E-19 uc003jsh.3,uc011cqm.2,uc011cqn.2 DEPDC1B E E-14 uc003jpm.3 GZMA E E-14 uc002wcq.4,uc010fzs.3,uc010fzt.3 PDCD E E-13 uc003cnx.4,uc003cny.1,uc010hiq.3,uc010hir.3 KIF E E-13 uc002tgc.3,uc002tgd.2,uc010fkb.3,uc010yxh.2 BUB E E-12 uc001ycb.2,uc001ycc.2,uc001ycd.3,uc001yce.1 ASB E E-12 uc002qza.3 ID E E-12 uc002ffm.3,uc002ffn.3 MAF E E-12 uc010unf.1,uc010ung.1,uc021srk.1 CTSH E E-11 uc001dhm.2,uc001dhn.3,uc001dho.3 AK E E-11 uc003tff.3,uc003tfg.3,uc010kxe.3,uc011kaz.2 ANLN E E-10 uc002bul.3,uc010bon.3,uc010boo.1,uc010urq.2,uc010 urr.1,uc021sxi.1 IGF1R E E-10 uc002wwp.1,uc010gdv.1 TPX E E-10 uc004eqd.3,uc004eqe.3,uc010nqf.3,uc010nqg.3,uc011 mtf.2,uc011mtg.2,uc011mth.2,uc011mti.2,uc011mtj.2, uc011mtl.2 PLS E E-10 uc001gtu.3,uc001gtv.3,uc001gtw.4 ASPM E E-09 uc004eun.4,uc004eup.4,uc011muk.1,uc011mul.1 SMARCA E E-09 uc003jvm.3,uc010ixb.3,uc031sjm.1 CCNB E E-09 uc001unt.3,uc001unu.3,uc001unv.3 SKA E E-09 uc010dka.1,uc010dkb.1,uc010dkc.1 TYMS E E-09 uc002oay.3,uc002oaz.3 ZBTB E E-09 uc002iup.2 NOG E E-09 uc002hrg.2,uc002hrh.2,uc002hri.2,uc002hrj.1,uc002hr k.1,uc010cvr.1 PLXDC E E-09 uc010sgt.2 KLRB E E-09 uc002teg.3,uc002teh.3,uc002tei.3,uc002tej.3,uc002tek. 4,uc002tel.3 LIMS E E-08 uc002hus.3 IGFBP E E-08 uc001uvd.3,uc010abi.3,uc010tee.1,uc010tef.2,uc010te g.1,uc021ric.1,uc021rid.1 NBEA E E-08 uc003iut.2,uc010irs.3 NEIL E E-08 uc001hiz.4,uc009xdc.3,uc010ptb.2 DTL E E-08 uc002jor.1,uc002jos.4,uc010dgi.1 MYO15B E E-08 57
25 uc001tnj.4,uc009zva.4,uc010sxf.3,uc031qjk.1 CORO1C E E-08 uc001dxx.4,uc021org.1 AMIGO E E-08 uc003sua.1,uc003sub.4,uc003sud.2,uc003sue.3,uc003s uf.2,uc003suh.3,uc003sui.3,uc003suj.3,uc003suk.3,uc0 10kud.2,uc010kue.1,uc011jya.2,uc011jyb.2,uc011jyc.2,uc011jyd.2,uc011jye.2,uc011jyf.2 HDAC E E-08 uc001tjl.3 PMCH E E-08 uc003qbw.4,uc003qbx.4,uc003qby.4,uc003qbz.1,uc01 0kfg.2,uc031spp.1 SAMD E E-07 uc002huq.3,uc002hur.1 TOP2A E E-07 uc001rvs.2,uc001rvt.2,uc001rvu.2,uc009zlm.1 RACGAP E E-07 uc003tfa.3 EEPD E E-07 uc003int.3,uc003inu.1 RNF E E-07 uc002csm.3,uc002csn.3,uc002cso.3,uc002csq.3,uc010 bsy.1,uc010uwn.2 PKMYT E E-07 uc003lzf.3,uc003lzg.3,uc003lzh.3,uc011dem.2 HMMR E E-07 uc001lke.3,uc001lkf.3,uc009yav.1,uc009yaw.1 MKI E E-07 uc002agk.3,uc002agl.3,uc002agm.3,uc002agn.3,uc010 bgj.3,uc010uhd.2,uc021snc.1 ANXA E E-07 uc003hxb.1,uc003hxc.1,uc003hxd.1 CENPE E E-07 uc002msy.1,uc002msz.1 ZNF E E-07 uc002kvs.4,uc002kvt.4,uc002kvu.4 TAF4B E E-07 uc001jld.3,uc001jle.3,uc001jlg.3,uc010qii.2,uc021prh. 1,uc031pvg.1 CDK E E-07 uc002bsl.4,uc010boe.3 FAM174B E E-07 uc003cbh.3,uc003cbi.3,uc003cbj.3 SATB E E-07 uc002teq.4,uc010fjn.3,uc010yws.2 EDAR E E-07 uc003yrx.3,uc010mdn.3,uc011lis.2,uc022bay.1 TRIB E E-07 uc001gvn.2 GPR E E-07 uc002bnm.1,uc002bnn.1,uc002bno.3,uc002bnp.1,uc00 2bnq.1,uc010bnp.1 FANCI E E-07 uc003tir.3,uc010kxv.3 BLVRA E E-07 uc003ken.4 F2R E E-07 uc001lfg.4,uc001lfk.1,uc001lfn.5,uc001lfo.1,uc010qtl. 2,uc010qtm.2,uc010qtn.2,uc010qto.2,uc010qtp.2,uc01 0qtq.2,uc021pzv.1,uc021pzw.1,uc021pzx.1,uc021pzy.1,uc021pzz.1,uc021qaa.1,uc021qab.1,uc021qac.1,uc031 pxk.1 FGFR E E-07 uc001dku.4,uc009wcm.3 SYDE E E-06 uc003wda.4 EPHA1-AS E E-06 uc002fid.3 COTL E E-06 uc002iou.4,uc002iov.4,uc002iow.3 ZNF E E-06 uc001mhk.3,uc001mhl.3,uc010rbw.2,uc010rbx.2 DENND5A E E-06 uc001zck.3,uc001zcl.3,uc001zcm.1,uc010azj.2,uc010u as.1,uc010uat.2 APBA E E-06 58
26 uc002kli.3 NDC E E-06 uc004eji.4,uc004ejj.4,uc010nod.3,uc022cbc.1,uc022cb d.1 GPRASP E E-06 uc010ywt.1 SH3RF E E-06 uc010gce.1 ISM E E-06 uc002mbo.3,uc002mbp.3,uc010duf.3,uc010xik.2 UHRF E E-06 uc003alz.3,uc003ama.3,uc010gwm.3 YWHAH E E-06 uc003cpo.4,uc010hjd.3,uc021wxb.1 CCR E E-06 uc003cdx.4,uc003cdy.4,uc010hfn.3,uc011axc.2 EOMES E E-06 uc003wcz.3 EPHA E E-06 uc001tlh.4,uc031qji.1 C12orf E E-06 uc003xep.1,uc003xeq.1,uc003xer.1,uc011lae.1 CDCA E E-06 uc001ocp.2 CDCA E E-06 uc003cpc.1,uc010hix.1,uc021www.1 CXCR E E-06 uc003pnw.3,uc010kch.3,uc011eab.2 BACH E E-06 uc001wrq.3,uc010aml.3 AKAP E E-06 uc021uec.1 EPR E E-06 uc003xsq.4,uc003xsr.4,uc010lyi.3,uc010lyj.3,uc022aur.1 PLAG E E-06 uc001scj.2,uc001sck.2,uc010soe.1 ESPL E E-06 uc010ppj.1,uc010ppk.1 KIF E E-06 uc002ktw.3,uc002ktx.1,uc002kty.3,uc002ktz.3,uc002k ua.3,uc010xap.2,uc021uid.1 RBBP E E-06 uc001zoa.3,uc001zob.3,uc010bcg.2,uc010ucx.1 LTK E E-06 uc003zzn.4,uc010mll.4,uc010mlm.4,uc011lpm.3,uc01 1lpn.3,uc011lpo.3,uc011lpp.3,uc011lpq.3,uc011lpr.3,u c011lps.3,uc022bgq.2 MELK E E-06 uc003gzm.4,uc003gzn.3,uc011bzr.2,uc011bzs.2 USP E E-06 uc001ezg.3,uc001ezh.3,uc010pdo.2,uc010pdp.2 RORC E E-06 uc001rdb.3,uc009zif.3,uc009zig.3,uc010shv.2 EPS E E-06 uc002jmz.1,uc002jna.1,uc002jnb.1 HN E E-06 uc002jef.2 PECAM E E-06 uc003idu.4,uc003idv.4 ANXA E E-06 uc003ybd.3 ZC2HC1A E E-05 uc003dly.2 PSMD6-AS E E-05 uc002ebq.3,uc002ebr.3,uc002ebs.1,uc010cam.1,uc010 can.3,uc010vfj.1 ITGAM E E-05 uc001egm.3,uc001egn.3,uc001ego.1,uc001egp.4,uc010 owy.2 CD E E-05 uc004cyb.3,uc004cyc.3,uc004cyd.3,uc004cye.3 SCML E E-05 uc001myc.3,uc001myd.3 CD E E-05 uc002mkg.3,uc010xkf.2 MYO1F E E-05 uc002asb.3,uc002asc.3,uc010bih.2,uc010bii.3,uc010uk c.2 KIF E E-05 uc003jqp.3,uc003jqq.3,uc003jqr.3,uc010iwb.3,uc010i IL6ST E E-05 59
27 wd.3,uc010iwe.1,uc010iwf.1,uc011cqk.2 uc002qvn.1,uc010evy.1 FAM72D E E-05 uc001bhe.2 E2F E E-05 uc001joz.3,uc001jpa.1,uc021prx.1 SRGN E E-05 uc003ccg.2,uc010hfc.2 UBE2E E E-05 uc003ont.3 CCDC E E-05 uc002ggi.4,uc002ggj.4,uc010cmf.3 TNK E E-05 uc002orh.1,uc010xwd.1 CEACAM E E-05 uc003ink.2,uc021xtj.1,uc021xtk.1 MND E E-05 uc001iks.1,uc001ikt.3,uc001iku.3 USP6NL E E-05 uc002lkm.4,uc010dqo.3,uc021uli.1 CD E E-05 uc002uhq.1,uc002uhs.3,uc010zdz.1,uc010zea.1,uc010z eb.2 PDK E E-05 uc004bgf.1,uc011lwx.1 KIAA E E-05 uc003ikc.3,uc003ikd.3,uc003ikf.3,uc010iov.3,uc011cic.2 SMAD E E-05 uc002fdk.3,uc002fdl.1,uc010cgr.1,uc010vmz.1 ZNRF E E-05 uc003xqk.2,uc003xql.2,uc010lxw.2,uc011ldi.2 MCM E E-05 uc001fmg.3,uc010pgq.2 SYT E E-05 uc003cen.3,uc003ceo.3,uc021wut.1 TGFBR E E-05 uc022cew.1,uc022cex.1 LINC E E-05 uc003xgg.3,uc003xgh.3,uc010luy.1 ESCO E E-05 uc001fyz.1,uc001fza.1 FCER1G E E-05 uc001dqz.4,uc010otv.2,uc010otx.2 CNN E E-05 uc001uvm.3,uc001uvn.3,uc001uvo.3,uc001uvp.2,uc00 1uvq.3,uc010ten.2 SPG E E-05 uc002taf.3,uc002tag.3,uc002tah.1,uc010fiq.1,uc010fir. 1,uc010yvr.1 AFF E E-05 uc002wlp.3,uc002wlq.3,uc010zqs.1 PCNA E E-05 uc003gpp.4,uc011bxj.3 NCAPG E E-05 uc003gol.1,uc021xmk.1 CD E E-05 uc003dyw.3,uc003dyx.3,uc003dyy.3,uc003dyz.3,uc01 0hqd.1 CD E E-05 uc002qys.3,uc002qyu.3 RNF144A E E-05 uc004ajf.1,uc004ajg.1,uc031tee.1 ANXA E E-05 uc001nnl.3,uc001nnm.3,uc010rko.2,uc021qjn.1 FAM111B E E-05 uc003vog.3,uc003voh.3,uc003voi.3,uc003voj.4,uc003v ok.2,uc010llr.1,uc010lls.1,uc010llt.3,uc010llu.1,uc010l lv.1,uc010llw.1,uc011kot.1,uc011kou.1 IRF E E-05 uc003ejd.2,uc011bkl.2 TXNRD E E-05 uc002xlb.1,uc010zwj.1 MYBL E E-05 uc003xyx.1 MSC E E-05 uc003gij.3,uc003gik.3,uc011bwb.2 EVC E E-05 uc001qez.3,uc001qfb.3,uc009zco.3,uc009zcp.3,uc009z cq.2 ARHGAP E E-05 60
28 uc001quy.3,uc009zgg.2 RIMKLB E E-05 uc003bhl.1,uc003bhm.1,uc003bhn.3,uc011aqy.2,uc011 aqz.2 GTSE E E-05 uc003kgy.1,uc010jap.2,uc011ctl.2,uc011ctm.2 DHFR E E-05 uc003lww.3,uc003lwy.3,uc003lwz.4,uc011ddr.1,uc021 ygq.1 ADAM E E-05 uc003opa.3,uc003opb.3,uc003opd.3,uc003ope.3 MOCS E E-05 uc003fli.1,uc003flj.1,uc003flp.1,uc011bqr.1,uc011bqs. 1 MCF2L E E-05 uc021vdr.1 RRM E E-05 uc003fhs.3,uc003fht.3,uc003fhu.4,uc003fhv.1 PLD E E-05 uc002aco.3,uc002acp.3,uc002acq.3,uc002acr.3 RAB27A E E-05 uc003awr.3 APOBEC3C E uc002qrh.2,uc002qri.2,uc002qrj.3,uc002qrk.1,uc002qrl.2,uc002qrm.2,uc010yhs.1,uc010yht.1 ZSCAN E uc003xtw.1 TOX E uc003upz.3 ARPC1B E uc002urx.4,uc002ury.4,uc010fsb.3 INPP E uc001mpm.3,uc001mpn.5,uc001mpo.2,uc009yhv.3 E2F E uc002fnp.3,uc002fnq.3 CPNE E uc002icp.4,uc002icq.3,uc002ict.3,uc002icu.3,uc002idc.1,uc002idd.3,uc002ide.1,uc010cyx.3,uc010cyy.1,uc01 0cyz.2,uc010cza.2,uc010czc.3,uc010whl.2,uc010whm. 2,uc010whn.2,uc010who.3,uc010whp.2,uc010whq.1,u c010whr.1,uc010whs.1,uc010wht.1 BRCA E uc002tvo.3,uc002tvp.3,uc002tvr.3,uc002tvs.3,uc002tvt.2,uc010fnn.3,uc010fno.3,uc021vqf.1,uc021vqg.1 GTDC E uc002tff.3,uc021vlz.1 LIMS E uc001hzh.3,uc009xgq.3,uc021plj.1,uc021plk.1 EXO E uc001stw.1 IFNG E uc002xle.4,uc002xlf.4,uc010ggo.3,uc010ggp.3,uc010z wk.2,uc021wdz.2,uc031rtm.1 TOX E uc001vtv.3,uc001vtw.3,uc001vty.4,uc010agx.3,uc010t kd.2,uc010tke.2 TFDP E uc003srm.3,uc003srn.5,uc003sro.5,uc003srq.4,uc003sr r.4,uc003srs.2,uc010ktr.3,uc010kts.4 ICA E uc003wnv.1,uc003wnw.1,uc003wnx.1,uc010lqu.1,uc0 11kwc.1,uc011kwd.1,uc011kwe.1 NCAPG E uc002unu.3,uc002unv.3,uc010frj.1,uc010zfl.1 ITGA E uc001pwf.3,uc001pwg.1 MCAM E uc003vez.3,uc003vfa.3,uc003vfc.3,uc003vfd.3,uc003v fe.3,uc011kmj.2,uc011kmk.2,uc022aka.1 NRCAM E uc004dyd.1,uc004dye.1 PDZD E uc003pjb.4,uc003pjc.3 TTK E uc001tyj.3,uc001tyl.3,uc001tym.3 DYNLL E
29 uc003xqh.1 CEBPD E uc004dan.3,uc004dao.3,uc004dap.3,uc004dar.3,uc004 dat.1,uc011mjt.2 ACOT E uc001crc.1,uc001crd.1,uc001cre.1,uc001crf.1,uc001cr g.1,uc010omn.1,uc010omo.1 STIL E uc001tay.3,uc001taz.3 DUSP E uc001kxa.3,uc001kxb.3,uc001kxc.3,uc001kxd.1 CALHM E uc003qvb.1,uc003qvc.1,uc003qvd.1,uc010kkk.1,uc010 kkl.1,uc011ego.1 RPS6KA E uc004aqh.3 CKS E uc001mwo.4,uc001mwp.3,uc009ykk.3,uc010rfc.2 PRR5L E uc002qot.3,uc002qou.3,uc010ygy.2,uc010ygz.2,uc010 yha.2 ZNF E uc001oht.3,uc001ohu.3,uc001ohv.3,uc009yrf.3 SLC29A E uc001zci.1,uc010azf.3,uc010azg.1,uc010azh.1,uc010az i.1,uc010uap.2 WHAMMP E uc003oef.4,uc011drf.2 KIFC E uc003giu.4,uc003giv.4,uc010idb.1,uc010idc.1,uc010id d.1,uc010ide.3,uc011bwc.2 JAKMIP E uc001mus.4,uc001mut.4,uc001muu.4,uc001muv.4,uc0 09yjx.3,uc009yjy.3,uc009yjz.3,uc009yka.3 CD E uc001hkm.3 CENPF E uc003fgi.3,uc010hwq.3,uc021xhe.1 GPR E uc001mlm.2,uc001mln.3,uc010rcr.2 PDE3B E uc002ewa.3,uc010cfe.3,uc010vlh.2 SMPD E uc001lyw.4,uc009yeh.1,uc009yei.3,uc009yej.3,uc010q yc.2,uc010qyd.2 RRM E uc001kfr.3,uc001kfs.3,uc001kft.3,uc001kfw.3,uc009xt p.3,uc010qna.2,uc010qnb.2,uc010qnc.2,uc010qnd.2,uc 010qne.2,uc031pwn.1 FAS E uc002ffw.4,uc002ffx.2,uc002ffy.4,uc010vnl.1,uc010vn m.1 CENPN E uc001vud.3,uc001vuf.3,uc001vug.3 GAS E uc001wjc.2,uc031qns.1 PPP1R3E E uc004edh.3,uc011mqr.2 ITM2A E uc003wul.3,uc003wum.3,uc003wun.3,uc003wuo.3,uc0 03wup.3,uc003wuq.3,uc003wuu.3,uc010lsc.3,uc011kx l.2 CTSB E uc003ype.3,uc010mdg.3 SNTB E uc011jwz.2 ZNF E uc001aub.3,uc001auc.3,uc001aud.4,uc001aue.1,uc009 vnm.3 DHRS E uc002yjx.2,uc021whl.1,uc031ruy.1,uc031ruz.1 NRIP E uc001qqw.1,uc001qqx.1,uc001qqy.1,uc001qra.1,uc001 qrb.1,uc009zfd.1,uc010sfn.1 GPR E
30 uc011dkv.2 ZNF204P E uc003idx.1 TMEM E uc001noq.3,uc001not.3,uc009ymv.3,uc010rla.2,uc010r lb.2 MS4A6A E uc001cgj.3 CITED E uc003cjl.3,uc021wwa.1,uc021wwb.1,uc021wwc.1,uc0 21wwd.1 CX3CR E uc001cix.3,uc001ciy.3 CDC E uc002ndi.2,uc002ndj.2,uc002ndk.1,uc002ndl.1 TPM E uc001slf.2,uc001slg.2 TIMELESS E uc001elb.4 AK E uc001xdw.3,uc001xdx.3,uc010trv.2,uc010trw.2 DACT E uc001vjt.1,uc001vju.1,uc001vjv.3,uc001vjw.1,uc001vj x.1,uc010thv.2,uc010thw.2,uc021rkq.1 LMO E uc003xlp.3,uc003xlu.3,uc003xlv.3,uc003xlw.1,uc010l wf.3,uc010lwk.3,uc011lbr.2,uc011lbs.2,uc011lbt.1,uc0 11lbu.2,uc011lbv.2,uc011lbw.2,uc011lbx.1,uc022aua.1,uc022aub.1,uc022auc.1,uc022aud.1 FGFR E uc002fjz.1,uc002fka.1,uc002fkb.3 ZCCHC E uc003hyt.2,uc003hyu.2,uc003hyv.2,uc003hyw.1,uc010 imb.2,uc011cfj.1,uc011cfk.2 LEF E uc003gxx.4,uc003gxy.1,uc010igj.3,uc011bzj.2 TXK E uc001xbs.3,uc001xbt.3 DLGAP E uc002rhr.3,uc002rhs.3,uc002rht.3 CENPA E uc001fwf.4,uc001fwg.4,uc001fwh.4,uc001fwi.4,uc001 fwj.3,uc001fwk.3,uc009wtn.3 CD E uc001kic.3 KIF E uc001ima.3,uc001imb.3,uc001imc.3 MCM E uc003icr.4,uc003ics.4,uc003ict.3,uc003icu.4 USP E uc003gsv.4,uc011bxy.3,uc021xne.2 DTHD E uc002tfw.3 LIMS E uc001qbc.3,uc001qbd.2,uc001qbe.3,uc001qbf.1,uc010 saq.2,uc010sar.2 ROBO E uc004azc.3,uc004azd.3,uc004aze.3,uc011lvc.2 TGFBR E uc002ckm.1 LMF E uc001qmu.3,uc001qmw.3,uc009zeg.3,uc010sep.2,uc01 0seq.2 RAD51AP E uc004dau.3,uc004dav.3,uc010nfv.3,uc022bty.1,uc031t ha.1 SAT E uc002the.2,uc002thf.4,uc010yxl.1 LOC E uc002niy.3,uc002niz.3,uc010ebp.3 SSBP E uc003yca.2 FABP E uc001tqq.3 ARPC E uc003kdl.4,uc003kdm.4,uc010izm.3 FAM169A E uc002jvc.3,uc002jvd.2,uc002jve.1,uc002jvf.3,uc002jv BIRC E
31 g.3,uc002jvh.3,uc002jvi.3,uc010dhk.1,uc010dhl.1 uc003nem.3,uc003nen.3,uc021ymn.1,uc021ymo.1 GMNN E uc002juw.2 TK E uc001knh.3,uc010qov.2 PGAM E uc002dhv.3,uc002dhx.3,uc002dhy.4 LOC E uc003zoe.2,uc003zof.3,uc011lne.1,uc011lnf.1 MLLT E uc003eed.3,uc003eee.4 POLQ E uc004erh.4 SLC25A E uc003wfb.2,uc003wfc.2,uc003wfd.2,uc011kug.2,uc01 1kuh.2,uc011kui.2,uc011kuj.2,uc022aov.1 EZH E uc001rxy.3,uc001rxz.3,uc001rya.3 POU6F E uc002pwj.3,uc002pwk.3 NKG E uc003fid.3,uc003fie.3,uc010hwu.2,uc021xhk.1 TNFSF E uc001rtv.4,uc001rtw.4,uc001rtx.4,uc009zlh.3,uc031qh d.1,uc031qhe.1 TROAP E uc001twr.2,uc009zws.1,uc010sza.1,uc010szb.1 WSB E uc002kag.3,uc002kak.2,uc002kal.2,uc021ufb.1 ACTG E uc003zyu.4,uc003zyv.3,uc003zyw.3,uc003zyx.3,uc010 mle.1,uc031tdr.1 RECK E uc001mok.3,uc001mol.3,uc009yho.2,uc010rdc.1,uc01 0rdd.2,uc021qep.1 LDHA E uc002ugy.4,uc002ugz.4,uc031rqa.1 CYBRD E uc001vog.3,uc021rma.1 GPR E uc003fay.1 PA2G4P E uc004bdo.1,uc004bdp.1,uc010mts.1 CTNNAL E uc002qbu.2,uc010eqq.1 ZNF E uc001bzi.3,uc009vux.3 CLSPN E uc001pav.3,uc001paw.3,uc001pax.3,uc001pay.3,uc001 paz.3,uc001pbb.3,uc001pbc.3,uc001pbd.3,uc001pbf.4, uc009yvj.3,uc010rte.2,uc010rtf.2,uc010rtg.2,uc010rth. 2,uc010rti.2,uc010rtj.2 SYTL E uc003fbc.3 LINC E uc001jlv.3,uc001jlw.3,uc001jlx.2,uc009xpf.1 RTKN E uc001zyv.3 SPPL2A E uc002uic.1,uc002uid.1,uc010zej.1,uc010zek.1 CDCA E uc001msc.2,uc001msd.3 KIF18A E uc003ldh.3,uc003ldi.3,uc003ldj.3,uc003ldl.3,uc011cyx.2,uc011cyy.2 CTNNA E uc003oer.3,uc003oes.3,uc003oet.3,uc003oeu.4,uc010jv b.3 BAK E uc002klp.3,uc002klq.3 MYOM E uc002ofq.3,uc002ofr.1 ZNF585B E uc003oon.3 KCNK E uc004ejk.3,uc004ejl.3,uc004ejm.3,uc022cay.1,uc022cb e.1,uc022cbf.1,uc022cbg.1,uc022cbh.1 GPRASP E
32 uc003vop.2,uc003voq.2 TSPAN E uc002dca.4,uc002dcb.4 CPPED E uc002rwo.4,uc002rwp.2,uc002rws.2,uc010fbm.3,uc01 0yol.2,uc010yom.2,uc021vhf.1 STON E uc003awv.3,uc003aww.3,uc003awx.3,uc003awy.3,uc0 11aog.1,uc021wpr.1 APOBEC3F E uc003fgn.1 AY E uc002xbc.2,uc002xbd.2,uc002xbe.2,uc010gey.2,uc010 zum.1 ACSS E uc002spl.2,uc002spm.2,uc010fgi.2,uc010fgj.1 CAPG E uc003qvl.3,uc003qvm.4,uc003qvn.4,uc010kkm.3 CCR E uc001ozg.3,uc001ozh.3 GAB E uc002hhn.3,uc010ctc.3,uc010wca.1,uc021tux.1 CDK5R E uc001xhn.1,uc001xho.1,uc001xhp.2,uc001xhq.1,uc010 aqh.1 PLEKHG E uc002erk.1 FBXL E uc003mib.1,uc003mic.3,uc010jkp.1,uc021yix.1 FAM153A E uc001ezl.3 S100A E uc010efz.2,uc010ega.2,uc021utz.1,uc021uua.1,uc021u ub.1,uc021uuc.1,uc021uud.1,uc021uue.1,uc021uuf.1 RASGRP E uc001udg.1,uc001udh.3,uc001udi.1,uc001udj.1,uc001u dk.1 HIP1R E uc001usu.3 LINC E uc002jlc.2,uc002jld.2,uc002jlk.3,uc010dfu.3,uc010wrb.2,uc010wrc.2,uc010wre.2 RAB E uc002ftx.3,uc031qxv.1 OVCA E uc001crw.4,uc001crx.4 BEND E uc001jzi.3,uc001jzj.3,uc001jzk.3,uc001jzl.4,uc009xru. 1 DLG E uc004ajv.4,uc004ajx.4 OSTF E uc002afz.3,uc031qsi.1 CCNB E uc001bkm.2,uc009vry.1 MAN1C E uc002rqv.3,uc021vgb.1,uc021vgc.1 HNRPLL E uc002iko.4,uc002iks.2,uc010wkd.1 ARL17A E uc003iwp.3,uc003iwq.3,uc003iwr.1 MLF1IP E uc002dbf.3,uc021tda.1 SNN E uc003ita.3,uc003itb.2,uc011ckc.1 HMGB E uc002fgt.3,uc010chg.1 PLCG E uc002jfh.3,uc002jfi.3,uc002jfj.1,uc010den.1 AXIN E uc004blh.4,uc004bli.4,uc011lyk.3,uc031tew.1,uc031te x.1 STOM E uc002tzk.4,uc002tzl.4,uc010foe.3,uc010fof.3 ACVR1C E uc003tmg.2,uc003tmh.2,uc003tmi.1,uc003tmj.2,uc010 kym.2,uc022acj.1 MYO1G E uc003fdf.1,uc003fdg.1,uc003fdh.3,uc003fdi.3,uc003fdj SMC E
33 .3,uc003fdl.3,uc010hwc.1,uc010hwd.3 uc003bdk.3 BIK E uc001ffq.3 PMVK E uc002ank.3,uc002anl.3 KIAA E uc003hvn.1,uc003hvo.1 H2AFZ E uc002ete.1,uc010vjn.1,uc010vjo.1 ATP6V0D E uc004cks.2,uc004ckt.2 NPDC E uc001efv.1,uc009wgy.1,uc021ose.1 VANGL E uc004ckj.1 CLIC E uc003kha.2,uc003khb.1,uc011ctn.2 RASGRF E uc002rqy.3 GALM E uc003cek.3,uc003cel.3,uc003cem.3,uc010hfq.3,uc010h fr.3 RBMS E uc002lbu.3,uc002lbv.3 HAUS E uc003tvv.4,uc003tvw.4,uc003tvx.4,uc011keg.2 AUTS E uc003wfr.4,uc003wft.4,uc003wfu.3 LOC E uc001yvg.3,uc010ayc.3,uc010ayd.3,uc010aye.1 WHAMMP E uc001gen.4,uc001geo.3,uc001gep.3,uc001geq.3,uc009 wvh.3,uc031prf.1 MPZL E uc004eaf.3,uc011mpx.2,uc022bys.1 CXCR E uc001mhs.3,uc001mht.3,uc001mhu.3 WEE E uc001fga.3,uc001fgb.3 CKS1B E uc001rfs.3,uc001rft.3,uc009ziz.3 ETNK E uc002eec.4 SHCBP E uc002jal.4,uc002jam.1,uc002jan.1,uc002jao.4,uc010w pe.2 TANC E uc001gcq.1,uc001gcr.1 NUF E uc002xmj.3 ADA E uc003owu.1,uc003owv.1,uc003oww.1,uc003owx.2,uc 003owy.2,uc003owz.1,uc011dvp.1,uc011dvq.2,uc021y zw.1,uc021yzx.1 SLC29A E uc003prd.2,uc003pre.3 PRDM E uc003mll.1,uc003mlm.1 RNF E uc001znr.4,uc001zns.4,uc001znt.4,uc001znu.4,uc001z nv.4,uc001znw.4,uc010ucw.2 NUSAP E uc003vvh.3,uc003vvi.3,uc003vvj.3,uc010lne.3,uc011k qu.2,uc011kqv.2,uc011kqw.2,uc011kqx.1 TBXAS E uc003kor.1 AK E uc003iec.4 CCNA E uc001hce.3,uc009xbj.1 NUAK E uc003kdn.3 GCNT E uc003pyt.4,uc003pyu.2,uc003pyv.2 HSF E uc002jdp.1,uc002jdq.1,uc002jdr.1 CD79B E uc004cqm.3,uc004cqn.4,uc010nda.3 CD E uc002rmr.4,uc002rms.1,uc010ezl.3,uc010ymm.2 FAM179A E
34 uc002ldw.4 ACAA E uc002hez.2,uc010wbn.2 BLMH E uc001ayw.4,uc001ayz.1,uc001aza.5,uc001azb.1,uc001 azc.2,uc009vot.1,uc010oce.1 NBPF E uc002dod.4,uc002doe.2,uc010vcl.2 ZKSCAN E uc002xwf.1,uc002xwg.1,uc010gih.1 ATP9A E uc002ilv.1 TBX E uc002sfr.4,uc002sfs.4,uc010yqn.1,uc010yqo.2 ANXA E uc003wgn.4,uc011kur.2 ATP6V0E2- AS E uc003taz.3,uc003tba.3,uc003tbb.3,uc003tbc.3,uc022ab e.1,uc022abf.1 GGCT E uc002vvg.3,uc010znd.2,uc010zne.2 HJURP E uc002ypn.2 URB E uc003iwg.3,uc003iwh.3,uc003iwi.3 CASP E uc001xjf.3 ATP6V1D E uc001zgw.3,uc001zgy.1,uc010ubw.1,uc010ubx.1 ARHGAP11 A E uc003ukt.1,uc003uku.1,uc003ukv.1,uc003ukx.1,uc003 uky.2,uc003ukz.1,uc010les.1,uc011khl.1 CDK E uc001ade.3,uc001adf.3 TNFRSF E uc002kky.3,uc002kkz.3 YES E uc002efk.2,uc021tht.1 LOC E uc021yfx.1,uc021yfy.1,uc021yfz.1 ZNF E uc001bqa.2,uc001bqb.2,uc001bqc.2,uc001bqe.2,uc001 bqf.2,uc001bqg.2 RCC E uc002znb.3 DQ E uc002sdj.2,uc002sdk.4,uc002sdl.4,uc010yqb.1,uc010y qc.2,uc010yqd.1 CEP E uc002evt.2,uc002evu.2,uc002evv.2,uc010cfb.2,uc010c fc.1 SLC7A uc003kfy.4,uc010jab.4,uc010jac.4,uc010jad.4 HOMER uc003keo.3 F2RL uc002vsy.2 TIGD uc002tuw.4 MCM uc003xuw.3 GGH uc002wia.1,uc002wib.1 LZTS uc004dyf.2,uc004dyg.3,uc010nkw.3 KIF4A uc001tei.3,uc009ztf.3,uc009ztg.3 NTN uc001hpw.3,uc010pvl.2,uc021pjv.1 H3F3A uc002rly.3 LOC uc001jrv.3,uc001jrw.4,uc001jrx.4,uc001jry.3,uc001jrz. 3,uc001jsc.1,uc001jsg.4,uc001jsh.4,uc001jsi.4,uc001jsj CDH
35 .4,uc009xql.3,uc010qjr.2,uc021psl.1 uc001xap.3,uc001xar.3,uc010aoi.1,uc010aoj.2 CDKN uc003lcp.1,uc003lcq.1,uc003lcr.1,uc003lcs.1,uc003lct. 1,uc003lcu.1,uc010jet.1,uc011cyp.1,uc031slf.1 CDC25C uc001oma.4,uc009yry.4,uc031qbz.1 CDK2AP uc003yia.3,uc010mbg.3 LAPTM4B uc011bds.2 DOCK uc001dhg.4,uc001dhh.2,uc010orh.1 ST6GALNA C uc003jpl.1 GZMK uc002vry.4 NMUR uc002kyl.3,uc002kym.3,uc002kyn.1,uc002kyo.1 ZSCAN uc003geu.1,uc003gev.1,uc021xko.1,uc021xkp.1 MXD uc002aga.4 MYO1E uc001tuz.3,uc001tva.3,uc001tvb.3,uc001tvc.3,uc001tv d.1 SLC24A uc001zht.3,uc001zhu.3,uc001zhv.3,uc001zhw.3,uc001 zhx.3,uc001zhy.3,uc001zhz.3,uc001zia.3,uc001zib.3,u c001zic.3,uc001zid.3,uc010bau.3 SLC12A uc003zxj.3,uc010mkx.2,uc011lox.2,uc011loy.2,uc022b gm.1 CCDC uc003bmb.5,uc003bmc.5,uc003bmd.5,uc003bme.5,uc0 10hbd.4,uc011arz.1 TYMP uc002jgk.3,uc002jgl.3 KPNA uc002vpl.2,uc002vpm.2 CCL uc003xbv.3,uc003xbw.4,uc011kzk.1 SORBS uc003ehe.3,uc003ehf.1,uc003ehg.3,uc003ehh.1,uc003e hi.3,uc003ehj.2,uc003ehk.3,uc010hru.2,uc010hrv.1,uc 010hrw.2,uc011bjy.1,uc011bjz.2 KALRN uc001zvu.4,uc001zvv.4 SQRDL uc003pum.3 GTF3C uc003utt.3,uc003utu.3,uc022aii.1 GAL3ST uc003wir.2,uc003wis.2,uc022apy.1 CDK uc002tfc.3,uc002tfe.1,uc021vly.1 RGPD uc002qzx.3 YWHAQ uc002jfd.3,uc002jfe.3,uc002jfg.3,uc010dem.3,uc021ub w.1 RGS uc004ebr.1,uc010nlq.1 FTX uc010fhg.4 ANKRD36B P uc002ohb.2,uc002ohc.2 ZNF uc001nfh.2 PSMC uc004erq.3,uc004err.3,uc022cdk.1 NKRF uc001zmi.4,uc001zml.4,uc001zmm.1,uc001zmn.1,uc0 10bbw.3,uc010bbx.3 RAD
36 uc001ywk.3 NDN uc001lvu.3,uc021qcf.1 ASCL uc003xtz.1,uc003xua.1,uc003xub.3 CA uc003xue.3,uc003xuf.3,uc022aux.1 CHD uc003hub.3,uc011cdz.2 TSPAN uc001vft.1,uc010tgq.1 LINC uc002owp.3,uc010eiu.1 ETHE uc003fsv.3,uc003fsw.3 CCDC uc001gpa.2,uc001gpb.2,uc001gpc.2,uc001gpd.2,uc010 pnt.2,uc021pfv.1,uc021pfw.1 GLUL uc001dyt.2,uc001dyu.2,uc001dyw.4,uc021orj.2 CSF uc002lmd.3,uc021ulp.1 ZNF uc001xgh.4,uc001xgi.4,uc021ruf.1,uc031qox.1 WDR uc003nwr.3 CLIC uc003slw.3 SNX uc003kbk.3,uc010iyn.3,uc010jmw.1,uc011crv.1,uc011 crw.1,uc011crx.1 GUSBP uc001uey.1 RILPL uc001iig.2,uc001iih.2,uc001iii.2,uc009xic.2 ASB uc001bmp.4 HMGN uc003yov.3 DSCC uc003hpi.1,uc003hpj.3,uc003hpk.3,uc003hpl.3,uc003h pm.3,uc010ikf.3 ARHGAP uc003yad.3,uc022awb.1 LY uc011bgy.3 GPR uc003lwk.2,uc003lwl.3 HAVCR uc003soq.4,uc003sor.4,uc003sot.4,uc011jwi.1 ACTB uc001izb.4,uc001izc.4,uc001izd.2,uc009xmc.2,uc010q eu.2,uc031pue.1,uc031pug.1 ZNF uc001alm.1,uc001aln.3 AJAP uc001urx.3,uc001ury.3,uc001urz.3,uc010tdo.1 PAN uc002ffu.3 CMC uc009wka.2 AK uc001oif.2,uc001oig.2,uc001oih.2,uc010rpe.2 DPP uc001pkb.1,uc001pkc.1,uc001pkd.4,uc001pke.2,uc001 pkf.3,uc001pkg.1,uc009yxr.1,uc009yxs.1,uc009yxt.1 ATM uc021wps.1,uc021wpt.1,uc021wpu.1,uc021wpv.1 APOBEC3H uc001rln.4 ALG10B uc002wpo.3,uc002wpp.3,uc010zrn.2,uc010zro.2 BFSP uc001oku.1,uc001okv.1,uc001okw.1,uc001okx.1 PPP1CA uc003pyw.1 BC uc002xay.3,uc002xaz.1,uc002xba.1,uc010gex.3 GGT uc003nac.3,uc011diq.2 HIVEP uc001pkk.3,uc010rvy.2,uc010rvz.2 EXPH uc003zsv.2,uc003zsx.3,uc010mju.3 AQP
37 uc001bce.3,uc009vpk.3,uc010ocz.2,uc021ohr.1 CAPZB uc002hqr.3 PSMB uc004ckq.2 FUT uc002sdh.3,uc010ypz.2,uc010yqa.2 SLC1A uc002qom.3,uc002qon.3 ZNF uc010ydi.2,uc010ydj.2 ZNF uc001blu.3 SH3BGRL uc001hsn.4,uc001hso.3,uc001hsp.2,uc001hsq.2,uc001h sr.1,uc009xez.2,uc009xfa.3 OBSCN uc003idl.2,uc003idm.2 MAD2L uc001dej.4,uc001dek.4,uc001del.4,uc001dem.4 DEPDC uc001rgc.3,uc001rgd.4,uc001rge.4,uc010six.2,uc010si y.2 BCAT uc002jkj.2,uc002jkk.2,uc002jkl.2,uc002jkm.4 KIF uc002wzu.4 E2F uc002ill.1,uc002ilm.3,uc002iln.3,uc010daz.1 EFCAB uc002lht.3,uc010dpo.1,uc010xej.1,uc021uky.1 SEC11C uc003nas.2,uc003nat.2,uc003nau.3,uc003nav.3,uc021y lt.1,uc021ylu.1,uc031smu.1 GFOD uc001nsg.3,uc021qkj.1 FEN uc002gaq.3,uc021tog.1 ZFP uc001iou.2 VIM uc002qbb.2,uc002qbc.2,uc010eql.2 ZNF uc002vbz.2,uc002vca.2,uc010zix.2,uc031rqz.1,uc031rr a.1,uc031rrb.1 KLF uc001rmz.3 ZCRB uc002dlz.1 PLK uc001xkk.3,uc001xkl.3,uc001xkm.3,uc001xkn.3,uc001 xko.1,uc010ttb.2,uc010ttc.2,uc010ttd.1 ACTN uc002ily.3,uc002ilz.3,uc010wky.2 MRPL uc002flu.3 CDT uc003qil.2,uc003qim.2 ABRACL uc004duu.4,uc004duv.4,uc004duw.4,uc004dux.1,uc01 0nkj.2,uc022bxv.1 SPIN uc001tuw.3,uc001tux.3,uc010syt.1,uc010syu.2 TPCN uc002ist.1 AK uc001ont.3,uc009ysg.4 LRP uc002vds.3,uc002vdt.3,uc002vdv.3,uc002vdw.3,uc002 vdx.1,uc002vdy.1 KANSL1L uc001eyn.1,uc001eyo.3,uc001eyp.3,uc021oys.1,uc031 ppc.1 SNX uc001cdr.3,uc010oix.2 HPCAL uc003jhs.2,uc003jht.2 SUB uc004auw.4,uc010mrl.3 FBP uc003okl.3,uc003okm.3,uc003okn.3,uc010jvv.1,uc011 PPARD
38 dtb.2,uc011dtc.2 uc002cgs.2 MRPL uc004drv.3,uc004drw.3,uc004drx.1 TSPYL uc001rcu.2,uc001rcv.2,uc001rcw.2,uc001rcx.2,uc001r cy.2,uc001rcz.2,uc001rda.2 PTPRO uc002fxz.4,uc002fya.4,uc002fyb.4,uc010vsa.2 MYBBP1A uc021vlv.1 SH3RF3-AS uc001uyw.2,uc001uyx.2 EPSTI uc003njx.3 HIST1H1B uc001wtd.3,uc010tpt.2,uc010tpu.2 PSMA uc003hrv.4,uc003hrw.2,uc011cdn.2,uc011cdo.2 HERC uc001ikr.1 AF uc002snd.3 HK uc001pfw.1 MAML uc010zhw.2,uc010zhx.2 FAM117B uc004avh.3,uc004avi.4,uc010mrm.1,uc011lul.1,uc022 bkl.1 FANCC uc001kcc.4,uc001kcd.4,uc001kce.4,uc001kcf.4,uc021p ux.1,uc021puy.1 FAM213A uc002svz.1,uc010fhu.1,uc010fhv.1,uc010yum.1,uc010 yun.1 NCAPH uc002omq.4,uc002omr.4 PSMC uc004ayt.3,uc004ayu.3,uc004ayv.2,uc004ayx.2,uc004a yy.2 ANKS uc003dso.2,uc003dsp.3,uc003dsq.3,uc003dsr.3,uc003d ss.3,uc003dst.3,uc003dsu.3,uc003dsv.3 CLDND uc003lbr.5,uc003lbs.1,uc010jek.3,uc010jel.1,uc010jem.1,uc010jen.2,uc011cyc.2,uc011cyd.3,uc031sle.1 KLHL uc001cpl.2,uc009vye.2 RAD54L uc001ada.3,uc001adb.3,uc001adc.3,uc001add.3 TNFRSF uc001tgd.2,uc001tge.2,uc001tgf.2,uc001tgg.4,uc001tg h.4,uc001tgi.3,uc001tgj.3,uc001tgk.3,uc009ztp.3,uc00 9ztr.3,uc009zts.2,uc009ztt.1,uc010svd.2,uc010sve.2,uc 010svf.2,uc010svg.2 ANKS1B uc001bmc.3,uc009vsg.1 CD uc003pfx.1 OGFRL uc001pxx.3,uc010rzp.1,uc010rzq.1 SORL uc002zdr.4 CSTB uc002csj.4,uc002csk.4,uc002csl.4,uc010uwm.2 PAQR uc001uog.2 FGF uc002qpc.4,uc002qpd.4,uc002qpe.1,uc010eue.3,uc031 rnf.1 ZNF uc002xwx.3 PFDN uc001ein.4,uc009whp.3 FAM72B uc002vhd.4,uc002vhe.3,uc002vhf.3 ARPC
Supplementary Table S1. Primary antibodies for Western blot analysis. Antibody name and specifications
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