Reference Table: Projection NMR Nomenclature (August 2006)
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- Λάρισα Κορνάρος
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1 Reference Table: Projection NMR Nomenclature (August 2006) Research Group Marion and Kozminski and Brutscher and Kupce and Freeman Projection NMR experiments (with Tilt angles) Equivalent GFT NMR experiment(s) (with corresponding scaling factors) 1. 3D 13 C/ 15 N filtered NOESY 1 (4,3)D [HC ali ]-NOESY-[NH] D RD-HNCA D RD-HN(CO)CA D RD-HACANH D DQ-HN{CACB} D DQ-HN(CO){CACB} D HNCO D HNCA D HN(CO)CA D H(N)COCA D DQ/ZQ HNCA D DQ/ZQ HN(CO)CA D DQ/ZQ HNCACB D DQ/ZQ HN(COCA)CB D DQ/ZQ HN(CA)HA D DQ/ZQ HN(COCA)HA D PR-HNCO 9 α=30 0 (3,2)D HNNCA 6 (4,2)D HACANH (4,2)D HNNC αβ C α (4,2)D HNN(CO)C αβ C α (3,2)D HNNCO 6 (3,2)D HNNCA 6 (3,2)D HN(N)COCA (3,2)D HNNCA 6 (3,2)D HNNC αβ C α 8 (3,2)D HNN(COCA)CB 6 (3,2)D HNN(CA)HA (3,2)D HNN(COCA)HA 1. (3,2)D HNNCO 6 Scaling factors (κ): N=0.5; CO=0.87 α=0 0, D PR-HNCA 10 α=±30 0 α=0 0, D PR-HN(CO)CA 10 α=±60 0 α=0 0, D PR-HNCOCA 11 α=±45 0 ; β= ±45 0 α=0 0 ; β=0 0 α=90 0 ; β=0 0 α=0 0 ; β= The TILT experiment: 3D 15 N- 2D [ 13 C, 1 H] Projection of 3D HNNCO, 2D [ 15 N, 1 H] HSQC 2. (3,2)D HNNCA 6 Scaling factors (κ): N=0.5; CA=0.87 2D [ 13 C, 1 H] Projection of 3D HNNCA, 2D [ 15 N, 1 H] HSQC 3. Scaling factors (κ): N=0.87; CA=0.5 2D [ 13 C, 1 H] Projection of 3D HNN(CO)CA, 4. (4,2)D HNNCOCA N=0.71; CO=0.5; CA=0.5 2D [ 13 C, 1 H] Projection of 4D HNNCOCA 2D [ 13 C α, 1 H] Projection of 4D HNNCOCA 5. (3,2)D [H]-NOESY-[NH] /(3,2)D [H]-
2 Zhou and coworkers NOESY-HSQC and 15 N-TOCSY-HSQC 12 Tilt angle: α=0 0, α=± Hyper-dimensional NMR using PR-NMR experiments described in 1-4 above D HACACONH 14 N=±60, CO=±60, CA=±60, HA=±60 N=0 0, CO=90 0 CA=90 0, HA=90 0 N=90 0, CO=0 0 CA=90 0, HA=90 0 N=90 0, CO=90 0 CA=0 0, HA=90 0 N=90 0, CO=90 0 CA=90 0, HA= (4,2)D PR-HNCACB 16 N=86.0 0, CA=15.5 0, CB= N=73.9 0, CA=33.7 0, CB= N=54.7 0, CA=54.7 0, CB= N=33.7 0, CA=73.9 0, CB= N=15.5 0, CA=86.0 0, CB= N=0 0, CA=90 0, CB=90 0 N=90 0, CA=0 0, CB=90 0 N=90 0, CA=90 0, CB= (4,2)D PR-HN(CO)CACB 16 Tilt angles same as in (2) 4. (4,2)D PR-Intra-HNCACB 16 Tilt angles same as in (2) 5. (4,2)D PR-HNCACO 16 CB shift evolution replaced by CO 6. (4,2)D PR-HNCOCA 16 CA shift evolution replaced by CO and 7. (4,2)D PR-HNCO i-1 CA i 16 CA shift evolution replaced by CO and TOCSY-[NH] 2 H=1.0, N=0.0 H=0.87, N= A set of (3,2)D and (4,2)D GFT NMR experiments described in 1-4 above 1. (5,2)D HACACONHN 15 Scaling factor (κ): N=0.5, CO=0.5, CA=0.5, HA=0.5 2D [ 13 C, 1 H] Projection of 4D/5D HACACONHN 2D [ 13 C α, 1 H] Projection of 4D/5D HACACONHN 2D [ 1 H α, 1 H] Projection of 4D/5D HACACONHN 2. (4,2)D HNNC αβ C α N=0.07, C α =0.96, C β =0.26 N=0.28, C α =0.83, C β =0.48 N=0.58,C α =0.58, C β =0.58 N=0.83, C α =0.28, C β =0.48 N=0.96, C α =0.07, C β =0.26 2D [ 13 C α, 1 H] Projection of 3D/4D HNNCACB 2D [ 13 C β, 1 H] Projection of 4D HNNCACB 3. (4,2)D HNN(CO)C αβ C α Scaling Factors same as in (2) 4. (4,2)D Intra-HNNC αβ C α Scaling Factors same as in (2) 5. (4,2)D Intra-HNNCACO C β shift evolution replaced by CO 6. (4,2)D HNNCOCA C α replaced by CO and C β replaced by CA 7. (4,2)D HNN<CO,CA> C α shift evolution replaced by CO and C β shift evolution replaced by CA
3 8. (4,2)D PR-HACANH 16 CA shift evolution replaced by HA and 9. (4,2)D PR-HACA(CO)NH 16 CA shift evolution replaced by HA and 10. (4,2)D PR CH 3 -N NOESY Projection angles distributed evenly in angle space: N=α i ; H= β i ; C=γ i ; i= (4,3)D HC(CO)NH-TOCSY and (4,3)D HC(C)NH-TOCSY 18 α=0 0, ±18 0, ±36 0, ±54 0, ±72 0, 90 0 Wüthrich and 1. 4D APSY-HNCOCA 19 α=±30 0 ; β=0 0 α=±60 0 ; β=0 0 α=0 0 ; β=±30 0 α=0 0 ; β=±60 0 α=90 0 ; β=±30 0 α=90 0 ; β=±60 0 α=±30 0 ; β=±30 0 α=±60 0 ; β=±30 0 α=±45 0 ; β=±60 0 α=0 0 ; β=0 0 α=90 0 ; β=0 0 α=0 0 ; β= D APSY-HACACONH 19 α=±30 0 ; β=0 0 ; γ=0 0 α=±60 0 ; β=0 0 ; γ= (4,2)D HACANHN C α shift evolution replaced by HA and C β shift evolution replaced by CA 9. (4,2)D HACA(CO)NH 15 CA shift evolution replaced by HA and 10. (4,2)D [HC ali ]-NOESY-[NH] 12 N = cos(α i ), H = cos(β i ), C ali = cos(γ i ); i= (4,3)D HC(CO)NH-TOCSY and (4,3)D HC(C)NH-TOCSY 1 H=1.0, 0.95, 0.81, 0.58, 0.31, C=0.0, 0.31, 0.58, 0.81, 0.95, Set of (3,2)D and (4,2)D GFT NMR experiments: (3,2)D HN(N)COCA CO=0.5; CA=0.87; CO=0.87; CA=0.5 N=0.5; CA=0.87 N=0.87; CA=0.5 (3,2)D HNNCO 6 N=0.5; CO=0.87 N=0.87; CO=0.5 (4,2)D HNNCOCA N=0.5; CO=0.44; CA=0.75 N=0.5; CO=0.75; CA=0.44 N=0.87; CO=0.35; CA=0.35 2D [ 13 C α, 1 H] Projection of 4D HNNCOCA 2D [ 13 C, 1 H] Projection of 4D HNNCOCA 2. A set of (3,2)D GFT NMR experiments (3,2)D (HACA)CONHN N= 0.87; CO=0.5 N= 0.5; CO=0.87
4 α=0 0 ; β=±30 0 ; γ=0 0 α=0 0 ; β=±60 0 ; γ=0 0 α= 0 0 ; β=0 0 ; γ=±30 0 α= 0 0 ; β=0 0 ; γ= ±60 0 α=90 0 ; β=±30 0 ; γ=0 0 α=90 0 ; β=±60 0 ; γ=0 0 α=90 0 ; β=0 0 ; γ=±30 0 α=90 0 ; β=0 0 ; γ=±60 0 α=0 0 ; β=90 0 ; γ=±30 0 α=0 0 ; β=90 0 ; γ=±60 0 α=0 0 ; β=0 0 ; γ=0 0 α=90 0 ; β=0 0 ; γ=0 0 α=0 0 ; β=90 0 ; γ=0 0 α=0 0 ; β=0 0 ; γ= D APSY-HACACONH 20 α=0 0 ; β=0 0 ; γ=90 0 ; δ=±30 0 α=0 0 ; β=90 0 ; γ=0 0 ; δ=±60 0 α=90 0 ; β=0 0 ; γ=0 0 ; δ=±30 0 α=90 0 ; β=0 0 ; γ=0 0 ; δ=±30 0 α=0 0 ; β=90 0 ; γ=±30 0 ; δ=0 0 α=90 0 ; β=0 0 ; γ=±60 0 ; δ=0 0 α=0 0 ; β=0 0 ; γ=±30 0 ; δ=0 0 α=90 0 ; β=±60 0 ; γ=0 0 ; δ=0 0 α=0 0 ; β=±30 0 ; γ=0 0 ; δ=0 0 (3,2)D (HA)CA(CO)NHN N= 0.87; CA=0.5 N= 0.5; CA=0.87 (3,2)D HA(CACO)NHN N= 0.87; HA=0.5 N= 0.5; HA=0.87 (3,2)D (HA)CACO(N)HN CA= 0.5; CO=0.87 CA= 0.87; CO=0.5 (3,2)D HA(CA)CO(N)HN CO= 0.87; HA=0.5 CO= 0.5; HA=0.87 (3,2)D HACA(CON)HN CA= 0.87; HA=0.5 CA= 0.5; HA=0.87 2D [ 13 C, 1 H] Projection of 4D HNNCOCA 2D [ 13 C α, 1 H] Projection of 4D HNNCOCA 2D [ 1 H α, 1 H] Projection of 4D HNNCOCA 3. Set of (3,2)D GFT NMR experiments: (3,2)D HNN(COCAN)HN N= 0.87; HN=0.5 (3,2)D HN(N)CO(CAN)HN CO= 0.5; HN=0.87 (3,2)D HN(NCO)CA(N)HN CA= 0.87; HN=0.5 (3,2)D HN(NCOCA)NHN N= 0.5; HN=0.87 (3,2)D (HN)NCO(CAN)HN CO= 0.87; N=0.5 (3,2)D (HN)N(CO)CA(N)HN CA= 0.5; N=0.87 (3,2)D (HN)N(COCA)NHN CA= 0.87; N=0.5 (3,2)D (HNN)COCA(N)HN CA= 0.5; CO=0.87 (3,2)D (HNN)CO(CA)NHN CA= 0.87; CO=0.5 α=±30 0 ; β=0 0 ; γ=0 0 ; δ=0 0 (3,2)D (HNNCO)CANHN
5 N= 0.87; CA=0.5 Wagner and α=0 0 ; β=0 0 ; γ=0 0 ; δ=0 0 α=90 0 ; β=0 0 ; γ=0 0 ; δ=0 0 α=0 0 ; β=90 0 ; γ=0 0 ; δ=0 0 α=0 0 ; β=0 0 ; γ=90 0 ; δ=0 0 α=0 0 ; β=0 0 ; γ=0 0 ; δ=90 0 3D RD-HCcoNH-TOCSY 21 2D [ 13 C α, 1 H] Projection of 3D HNNCA 2D [ 13 C, 1 H] Projection of 3D HNN(CA)CO 2D [ 15 N, 1 H] Projection of 3D HNNCO 2D [ 1 H, 1 H] Projection of 4D HNNCOCA (4,3)D HC(CO)NHN-TOCSY Markley and 1. 3D HNCO 22 α=50 0, 35 0, 10 0, 70 0, 20 0, 25 0, D HNCACB 22 α=20 0, 10 0, 30 0, 40 0, 50 0, 60 0, D CBCA(CO)NHN 22 α=50 0, 55 0, 40 0, 70 0, 30 0, 65 0, (3,2)D HNNCO 6 N=0.76, 0.57, 0.17, 0.94, 0.34, 0.42, 0.71 CO =0.64, 0.82, 0.98, 0.34, 0.94, 0.90, (3,2)D HNNCACB 6 N=0.34, 0.17, 0.50, 0.64, 0.76, 0.87, 0.94 CA/CB=0.94, 0.98, 0.87, 0.76, 0.64, 0.50, (3,2)D CBCA(CO)NHN 6 N=0.76, 0.82, 0.65, 0.94, 0.87, 0.90, 0.34 CA/CB=0.64, 0.57, 0.76, 0.34, 0.50, 0.42, 0.94
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