Overlapping sets of transcripts from host and non-host interactions of tomato are expressed early during non-host resistance

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Ματθάν Βαρ-ιησούς Κουταλιανός
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1 POJ 7(1):19-27 (2014) ISSN: Overlapping sets of transcripts from host and non-host interactions of tomato are expressed early during non-host resistance Battepati Uma and Appa Rao Podile* Supplementary Table 1. Primary metabolism (carbohydrate and photosynthesis)-related transcripts that are differentially regulated during compatible and non-host interactions compared to mock-inoculated tomato leaves. hpi-hours post inoculation. Agilent probe ID Annonation M. grisea A. alternata Carbohydrate metabolism Starch metabolism A_96_P Starch-granule-bound R1 protein A_96_P α-amylase A_96_P α-1,4 glucan phosphorylase L A_96_P α-glucosidase A_96_P Starch phosphorylase L A_96_P Isoamylase isoform A_96_P Granule-bound starch synthase A_96_P Granule-bound starch synthase A_96_P Alpha-glucan water dikinase chloroplastic A_96_P Starch branching enzyme II A_96_P Soluble starch synthase Sucrose metabolism A_96_P β-fructofuranosidase A_96_P Sucrose synthase A_96_P sucrose synthase A_96_P Sucrose-phosphate-synthase A_96_P Apoplastic invertase A_96_P Acid invertase A_96_P Sucrose synthase Glycolysis pathway A_96_P Hexokinase A_96_P Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha A_96_P Fructose-bisphosphate aldolase A_96_P Plastid enolase A_96_P Glyceraldehyde-3-phosphate dehydrogenase A_96_P Fructose-bisphosphate aldolase A_96_P Pyruvate kinase, cytosolic isozyme A_96_P Phosphoglycerate kinase A_96_P Enolase Calvin cycle A_96_P Transaldolase A_96_P RUBISCO- large subunit A_96_P Ribulose-1,5-bisphosphate carboxylase, small subunit A_96_P Chloroplast Rubisco activase A_96_P Fructose-1,6-bisphosphatase class A_96_P Ribulose-phosphate 3-epimerase A_96_P Ribulose bisphosphate carboxylase small chain 3B A_96_P Carbonic anhydrase A_96_P Ribulosebisphosphate carboxylase/oxygenase activase Photosynthesis

2 A_96_P Respiratory burst oxidase protein F A_96_P Chlorophyll a,b binding protein type I A_96_P Chlorophyll a/b binding protein Lhcb A_96_P Chlorophyll a/b binding protein A_96_P PsaA A_96_P Phytochrome B A_96_P Chlorophyll a/b binding protein precursor CAB6A A_96_P Chlorophyll a/b-binding protein precursor A_96_P Cytochrome b A_96_P Apocytochrome f A_96_P kDa precursor protein of oxygen-evolving complex A_96_P Photosystem II oxygen-evolving complex protein A_96_P Pre-plastocyanin (AA -64 to 106) A_96_P PsaD A_96_P violaxanthin de-epoxidase A_96_P PSII polypeptide A_96_P NADH-quinone oxidoreductase subunit A A_96_P PsaB A_96_P Oxygen-evolving enhancer protein A_96_P NADPH oxidase RBOHD A_96_P Ferredoxin-I A_96_P Ferredoxin-NADP reductase A_96_P Subunit A of ferredoxin-thioredoxin-reductase A_96_P Cytochrome b6-f complex iron-sulfur subunit A_96_P Ferrochelatase Fold changes in up- (with no prefix) and down-regulated (with negative mark prefix) between mock- and pathogen (M. grisea and A. Supplementary Table 2. Transport-related transcripts that are differentially regulated during compatible and non-host interactions compared to mock-inoculated tomato leaves. hpi-hours post inoculation. A_96_P Voltage-dependent anion-selective channel A_96_P Probable polyol transporter A_96_P Transporter-related A_96_P Inorganic phosphate transporter A_96_P Alternative oxidase 1b A_96_P st3 protein A_96_P Plastid quinol oxidase A_96_P Amino acid permease A_96_P05525 Vacuolar proton translocating ATPase 116 kda subunit a isoform 4 A_96_P HXK A_96_P Plastidic ATP/ADP-transporter A_96_P Ferritin A_96_P Hexose transporter A_96_P Amino acid transporter A_96_P Hexose transporter A_96_P ADP,ATP carrier protein-like A_96_P Sucrose transport protein A_96_P Plastidic ATP/ADP-transporter A_96_P Sucrose transport protein-sut A_96_P Envelope membrane protein A_96_P Plasmalemma Na+/H+ antiporter-like A_96_P LeOPT1 protein A_96_P ABCG subfamily transporter A_96_P Glucose-6-phosphate/phosphate translocator A_96_P Neryl diphosphate synthase A_96_P Triose phosphate/phosphate translocator A_96_P ABC transporter-like A_96_P ATP synthase subunit a A_96_P Non-specific lipid-transfer protein

3 A_96_P H(+)-transporting ATPase A_96_P Non-specific lipid-transfer protein A_96_P Ammonium transporter A_96_P X intrinsic protein A_96_P Non-specific lipid transfer protein A_96_P Potassium channel A_96_P Ca2+-ATPase A_96_P Membrane channel protein A_96_P ABCG subfamily transporter protein (PDR4) A_96_P ABCG subfamily transporter protein A_96_P P-glycoprotein A_96_P Putative inward rectifying potassium channel A_96_P Hexose transporter (Fragment) A_96_P Oxoglutarate/malate translocator A_96_P ATPase-like A_96_P Remorin (pp34) Fold changes in up- (with no prefix) and down-regulated (with negative mark prefix) between mock- and pathogen (M. grisea and A. Supplementary Table 3. Fatty acid and amino acid metabolism-related transcripts that are differentially regulated during compatible and non-host interactions compared to mock-inoculated tomato leaves. hpi-hours post inoculation. Fatty acid metabolism A_96_P alpha-dox A_96_P Linoleate 9S-lipoxygenase A_96_P Linoleate 13S-lipoxygenase A_96_P Putative sterol desaturase A_96_P Phosphatidate cytidylyltransferase A_96_P Peroxisomal acetoacetyl-coenzyme A thiolase A_96_P Oxysterol-binding protein A_96_P Linoleate 13S-lipoxygenase A_96_P Fatty acid hydroperoxide lyase A_96_P Gamma-tocopherol methyltransferase A_96_P Probable linoleate 9S-lipoxygenase A_96_P Phosphoinositide-specific phospholipase C A_96_P Omega-3 fatty acid desaturase A_96_P ketoacyl-CoA synthase Amino acid metabolism A_96_P Aromatic amino acid decarboxylase 1B A_96_P Aromatic amino acid decarboxylase 1A A_96_P Aromatic amino acid decarboxylase A_96_P Asparagine synthetase A_96_P γ-aminobutyrate transaminase subunit precursor isozyme 1 A_96_P Arginase A_96_P Glutamate--tRNA ligase-like protein A_96_P Glutamine synthetase A_96_P Aminomethyltransferase A_96_P Glutamate decarboxylase isoform A_96_P Arginine decarboxylase A_96_P Glycine dehydrogenase A_96_P Polyprotein, putative

4 Fold changes in up- (with no prefix) and down-regulated (with negative mark prefix) between mock- and pathogen (M. grisea and A. Supplementary Table 4. Transcription factors that are differentially-regulated during compatible and non-host interactions compared to mock-inoculated tomato leaves. hips-hours post inoculation. A_96_P RNA1 polyprotein A_96_P NAC domain protein NAC A_96_P LeCBF1 protein A_96_P Putative NAC domain protein A_96_P C2H2-type zinc finger protein A_96_P Cup-shaped cotyledon A_96_P Probable WRKY transcription factor A_96_P Ripening regulated protein DDTFR10/A A_96_P Putative regulator of chromosome condensation A_96_P ERF transcription factor A_96_P Probable WRKY transcription factor A_96_P Putative arginine/serine-rich protein-like A_96_P Ethylene-responsive factor A_96_P Pti A_96_P DREB A_96_P Histone H2B A_96_P WRKY protein A_96_P Heat stress transcription factor A A_96_P Mitochondrial SBP A_96_P Myb-related protein MYBAS A_96_P APETALA2-like protein A_96_P myb-related transcription factor A_96_P GAGA-binding transcriptional activator A_96_P Nam-like protein A_96_P Anaerobic basic leucine zipper protein A_96_P Class II knotted-like homeodomain protein A_96_P EIL3 protein A_96_P Nam-like protein A_96_P PGPD A_96_P Transcription factor JERF A_96_P WRKY transcription factor A_96_P Transcription factor JERF A_96_P Ribonuclease A_96_P Adenosine kinase isoform 1T-like protein A_96_P MADS transcriptional factor A_96_P MADS-box protein A_96_P Agamous-like MADS-box protein A_96_P Dof zinc finger protein A_96_P DREB A_96_P S ribosomal protein S A_96_P IAA11 protein A_96_P IAA7 protein A_96_P Self-pruning G-box protein A_96_P CRT binding factor 2A A_96_P vsf-1 protein A_96_P NO APICAL MERISTEM A_96_P Transcription factor A_96_P Bell-like homeodomain protein A_96_P VP1-ABI3-like protein A_96_P TDR3 protein A_96_P Translation initiation factor eif(iso)4e A_96_P IAA2 protein A_96_P RNA polymerase IV largest subunit A_96_P Ribonuclease E A_96_P Deoxyuridine triphosphatase A_96_P Transcription factor MYB A_96_P Deficiens analogue

5 Fold changes in up- (with no prefix) and down-regulated (with negative mark prefix) between mock- and pathogen (M. grisea and A.

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